MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-87-P2

Family name MIR-87 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-87b
Paralogues Tca-Mir-87-P1 
Orthologues Aae-Mir-87-P2  Aga-Mir-87-P2  Bge-Mir-87-P2a  Bge-Mir-87-P2b  Cbr-Mir-87-o2  Cel-Mir-87-o2  Csc-Mir-87-P2k  Csc-Mir-87-P2l  Cte-Mir-87-P2  Dan-Mir-87-P2-v1  Dgr-Mir-87-P2  Dlo-Mir-87-P2  Dme-Mir-87-P2-v1  Dmo-Mir-87-P2-v1  Dsi-Mir-87-P2-v1  Dya-Mir-87-P2-v1  Gpa-Mir-87-P2-v1  Gsp-Mir-87  Hme-Mir-87-P2  Hru-Mir-87-P2  Isc-Mir-87-P2  Lan-Mir-87-P2  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j  Mgi-Mir-87-P2  Ofu-Mir-87-P2  Pau-Mir-87-P2  Pve-Mir-87-P2  Sne-Mir-87  Snu-Mir-87-P2 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG6: 1502215-1502272 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-P2)		 Mir-87-P1 LG6: 1499347-1499408 [+] Ensembl
Mir-87-P2 LG6: 1502215-1502272 [+] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
CCCGCGCAUCGGGGGAUGCCUGCCGUCGACACGCUUGAACUUUGUUUUUCCUGUGCAUUAUUCUAGGUGAGCAAAGAUUCAGGUGUGUUGACUAACUCUCUCAUCAGAAUGCUCGCCG
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Structure
        10        20          30         40        50        
CCCGCGCAUCGGGGGAUGCCUGCC--               -|       UU   GUGCA 
                          GUCGACACGCUUGAA CUUUGUUU  CCU     U
                          CAGUUGUGUGGACUU GAAACGAG  GGA     U
GCCGCUCGUAAGACUACUCUCUCAAU               A^       U-   UCUUA 
      110       100        90        80        70         60
Deep sequencing
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CommentThere appears to be a second Drosha cut -1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-87-P2_5p*
mirBase accessionMIMAT0018768
Sequence 
0- ACGCUUGAACUUUGUUUUUCCU -22
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Mature sequence

Tca-Mir-87-P2_3p
mirBase accessionMIMAT0018769
Sequence 
36- GUGAGCAAAGAUUCAGGUGUGU -58
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