| MirGeneDB ID | Csc-Mir-87-P2l |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Arizona bark scorpion (Centruroides sculpturatus) |
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| MiRBase ID |
|
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| Paralogues |
Csc-Mir-87-P1k1
Csc-Mir-87-P1k2
Csc-Mir-87-P1l
Csc-Mir-87-P2k
|
|---|
| Orthologues |
Aae-Mir-87-P2
Cbr-Mir-87-o2
Cel-Mir-87-o2
Cgi-Mir-87-P2
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Hme-Mir-87-P2
Isc-Mir-87-P2
Lan-Mir-87-P2
Tca-Mir-87-P2
|
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| Node of Origin (locus) |
C. sculpturatus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCF_000671375.1_CSC) |
NW_019384506.1: 706960-707019 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUUUGGAUGAUGAUGUCUUGUUCUCUUUGUCCACCUGAAAGGUUGUCUCAACCUUGAGAAAGAAAUAGGUGAGCAAAGUUUCAGGUGUGUAGAUGGAGCAGACUAACUUCAAAUGCAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUGGAUGAUGAUGUC--| C UC GG U A UGAGA
UUGUUCU UUUG CACCUGAAA UUG CUCA CCU A
GACGAGG AGAU GUGGACUUU AAC GAGU GGA A
ACAACGUAAACUUCAAUCA^ U GU GA - - UAAAG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Csc-Mir-87-P2l_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCACCUGAAAGGUUGUCUCAACCU -24
Get sequence
|
|---|
| Mature sequence |
Csc-Mir-87-P2l_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GUGAGCAAAGUUUCAGGUGUGU -60
Get sequence
|
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