MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-52-P1

Family name MIR-52 (all species)
Seed ACCCGUA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-52
Paralogues
Orthologues Cel-Mir-52-P1 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 IV: 7363031-7363092 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-52-P1)		 Mir-52-P1 IV: 7363031-7363092 [+] Ensembl
Mir-10-P2 IV: 7366632-7366691 [+] Ensembl
Mir-277-P6a IV: 7400660-7400721 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUAUUCUUCUUUCCCGCUCUGACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAUAGAGCUCAAUCACGAUACAAUGAGCGGGUAGCCGGUCAUCGAGUCGGAACAUUGGUUCCCAU
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Structure
        10        20          30        40        50        60 
CUCUUAUUCUUCUUUCCC    --|   AGUCC      A   A   UUC    CUUGACAU 
                  GCUC  UGAC     ACCCGU CAU UGU   CGUG        A
                  UGAG  ACUG     UGGGCG GUA ACA   GCAC        G
UACCCUUGGUUACAAGGC    CU^   GCCGA      A   -   UA-    UAACUCGA 
120       110       100        90        80          70
Deep sequencing
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CommentAlthough the seed sequence is the same as Mir-10-P2 the remainder of the sequence is distinct enough to warrant the recognition of a distinct family.
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-52-P1_5p
mirBase accessionMIMAT0000476
Sequence 
0- CACCCGUACAUAUGUUUCCGUGCU -24
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Star sequence

Cbr-Mir-52-P1_3p*
mirBase accessionNone
Sequence 
40- CACGAUACAAUGAGCGGGUAGC -62
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