MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-277-P6a

Family name MIR-277 (all species)
Seed AAAUGCA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-232-1
Paralogues Cbr-Mir-277-P6b 
Orthologues Aae-Mir-277  Bge-Mir-277  Bpl-Mir-277  Cel-Mir-277  Cgi-Mir-277  Dan-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Efe-Mir-277  Esc-Mir-277  Hme-Mir-277  Isc-Mir-277  Lgi-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Sme-Mir-277-P6a  Tca-Mir-277 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 IV: 7400660-7400721 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P6a)		 Mir-52-P1 IV: 7363031-7363092 [+] Ensembl
Mir-10-P2 IV: 7366632-7366691 [+] Ensembl
Mir-277-P6a IV: 7400660-7400721 [+] Ensembl
Mir-246 IV: 7431821-7431881 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAAGUUUCUCAAUUCAAGAUUUCGGAUCUCCGUAGUUUUGACCAUUUUAUCCAACCUAAUAAUGUGAUAAAUGCAUCUUAACUGCGGUGAUCUGGAUUUUGUGAACCGUUUUUUUUCACC
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Structure
        10          20        30        40        50        60
UGUAAGUUUCUCAAUUCA--|  U        U        UU  CCAU      CAACCU 
                    AGA UUCGGAUC CCGUAGUU  GA    UUUAUC      A
                    UUU AGGUCUAG GGCGUCAA  CU    AAAUAG      A
CCACUUUUUUUUGCCAAGUG^  U        U        UU  ACGU      UGUAAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-277-P6a_5p*
mirBase accessionNone
Sequence 
0- UCCGUAGUUUUGACCAUUUUAUC -23
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Mature sequence

Cbr-Mir-277-P6a_3p
mirBase accessionMIMAT0000497
Sequence 
39- UAAAUGCAUCUUAACUGCGGUGA -62
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