Mir-277

MirGeneDB ID

Hru-Mir-277

Family name

MIR-277 (all species)

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Ava-Mir-277-P10 Ava-Mir-277-P11 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cbr-Mir-277-P6a Cbr-Mir-277-P6b Cel-Mir-277 Csc-Mir-277-P18a Csc-Mir-277-P18b Cte-Mir-277-P1 Cte-Mir-277-P2 Dan-Mir-277 Dgr-Mir-277-P19 Dgr-Mir-277-P20 Dgr-Mir-277-P21 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Egr-Mir-277-P7 Egr-Mir-277-P8 Egr-Mir-277-P9 Esc-Mir-277 Gpa-Mir-277 Gsa-Mir-277-P8 Gsa-Mir-277-P9 Gsp-Mir-277 Hme-Mir-277 Isc-Mir-277 Lan-Mir-277-P3 Lan-Mir-277-P4 Lan-Mir-277-P5 Lgi-Mir-277 Llo-Mir-277 Lpo-Mir-277-P12 Lpo-Mir-277-P13 Lpo-Mir-277-P14 Lpo-Mir-277-P15 Lpo-Mir-277-P16 Lpo-Mir-277-P17 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ofu-Mir-277-P22 Ofu-Mir-277-P23 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sma-Mir-277-P7 Sma-Mir-277-P8 Sme-Mir-277-P7a Sme-Mir-277-P7b Sme-Mir-277-P8a Sme-Mir-277-P8b Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000024.1: 8013843-8013905 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-277)

Mir-317 JALGQA010000024.1: 7998742-7998801 [+] UCSC Ensembl
Mir-277 JALGQA010000024.1: 8013843-8013905 [+] UCSC Ensembl
Mir-34 JALGQA010000024.1: 8020798-8020855 [+] UCSC Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

CCGACCUCGAGUAAGUUGCCGCUUGACCUCUGUACCAGAUAUGCAUUCUACAUUUAACGUUGCUAACUUGUAAAUGCAUCAUCUGGUAUCUGAGACGAGUGGGCGCUGACAUCACCGUAAACC

Get precursor sequence

Structure

        10           20        30         40         50        60
CCGACCUCGAGUAAGUUG---       AC   U-         -|      C    UUUAACG 
                     CCGCUUG  CUC  GUACCAGAU AUGCAUU UACA       U
                     GGUGAGC  GAG  UAUGGUCUA UACGUAA AUGU       U
CCAAAUGCCACUACAGUCGCG       A-   UC         C^      -    UCAAUCG 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Hru-Mir-277_5p*

mirBase accession

None

Sequence

0- UGUACCAGAUAUGCAUUCUACA -22

Get sequence

Mature sequence

Hru-Mir-277_3p

mirBase accession

None

Sequence

40- UAAAUGCAUCAUCUGGUAUCUGA -63

Get sequence