MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-277

Family name MIR-277 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Ava-Mir-277-P10  Ava-Mir-277-P11  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Cel-Mir-277  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dgr-Mir-277-P19  Dgr-Mir-277-P20  Dgr-Mir-277-P21  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P7  Egr-Mir-277-P8  Egr-Mir-277-P9  Esc-Mir-277  Gpa-Mir-277  Gsa-Mir-277-P8  Gsa-Mir-277-P9  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Llo-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ofu-Mir-277-P22  Ofu-Mir-277-P23  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P7  Sma-Mir-277-P8  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sme-Mir-277-P8a  Sme-Mir-277-P8b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold622: 474084-474143 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-277)		 Mir-317-P1 scaffold622: 468076-468134 [+] Ensembl
Mir-317-P2 scaffold622: 468583-468640 [+] Ensembl
Mir-277 scaffold622: 474084-474143 [+] Ensembl
Mir-34 scaffold622: 474792-474856 [+] Ensembl
Seed AAAUGCA
Precursor
(pre-Mir +30nt flank)		 
GGGGAAAACAGUAACUGUGUUUCACUGGUCAGUACCAGAUGUGCAUUGUGCAUCCGUAGUAGUAGUGUAAAUGCAUAAUCUGGUAUGUGACCGGCCGAUGCGCUCUCAUCCUAACCUUCA
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Structure
        10         20         30          40        50         
GGGGAAAACAGUAACUGU-  U  A-       -        -|       G    UCCGUA 
                   GU UC  CUGGUCA GUACCAGA UGUGCAUU UGCA      \
                   CG AG  GGCCAGU UAUGGUCU AUACGUAA AUGU      G
ACUUCCAAUCCUACUCUCG  U  CC       G        A^       -    GAUGAU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-277_5p*
mirBase accessionNone
Sequence 
0- AGUACCAGAUGUGCAUUGUGCA -22
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Mature sequence

Mgi-Mir-277_3p
mirBase accessionNone
Sequence 
37- UAAAUGCAUAAUCUGGUAUGUGA -60
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