MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-277-P7

Family name MIR-277 (all species)
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues Sma-Mir-277-P8 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P7  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Tricladida + Neodermata
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601627.3: 36604211-36604356 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P7)		 Mir-277-P7 HE601627.3: 36604211-36604356 [+] UCSC Ensembl
Mir-277-P8 HE601627.3: 36604484-36604621 [+] UCSC Ensembl
Seed AAAUGCA
Precursor
(pre-Mir +30nt flank)		 
AUAUGAUUGAUUAUAUUGUGUAUUGAAAAUUGGGCAGUUGGUGUAUUUCCACCUCAAAAUAAAAAAAAAACAAAAACAUAAUUCAACAAAGUUCGUUUUUAAUUUGAUCUAUUGAAAAAAAGAUCAAAUUAAAUGAAUUUAUGUUGAAUAUGUGAAAAUGCAUCAUCUACCCUAGAUAUCAAUACAUAGAACAUCAUUAUUUUGAU
Get precursor sequence
Structure
        10          20        30         40        50        60        70        80        90       100  
AUAUGAUUGAUUAUAUU--         AAAUU-|  C  U          C  CCUCAAAAUAAAAAAAAAACAAAAACAUAAUUCAACAAAGUUCGUUUUUA 
                   GUGUAUUGA      GGG AG UGGUGUAUUU CA                                                  \
                   UACAUAACU      CCC UC ACUACGUAAA GU                                                  A
UAGUUUUAUUACUACAAGA         AUAGAU^  A  U          A  GUAUAAGUUGUAUUUAAGUAAAUUAAACUAGAAAAAAAGUUAUCUAGUUU 
    200       190       180       170       160       150       140       130       120       110
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Star sequence

Sma-Mir-277-P7_5p*
mirBase accessionNone
Sequence 
0- UGGGCAGUUGGUGUAUUUCCA -21
Get sequence
Mature sequence

Sma-Mir-277-P7_3p
mirBase accessionNone
Sequence 
124- AAAAUGCAUCAUCUACCCUAGA -146
Get sequence