MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-277

Family name MIR-277 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-232
Paralogues
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Ava-Mir-277-P10  Ava-Mir-277-P11  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dgr-Mir-277-P19  Dgr-Mir-277-P20  Dgr-Mir-277-P21  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P7  Egr-Mir-277-P8  Egr-Mir-277-P9  Esc-Mir-277  Gpa-Mir-277  Gsa-Mir-277-P8  Gsa-Mir-277-P9  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Llo-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ofu-Mir-277-P22  Ofu-Mir-277-P23  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P7  Sma-Mir-277-P8  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sme-Mir-277-P8a  Sme-Mir-277-P8b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrIV: 10994184-10994248 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277)		 Mir-277 chrIV: 10994184-10994248 [-] UCSC Ensembl
Mir-10-P2 chrIV: 11026035-11026096 [-] UCSC Ensembl
Mir-52-P2 chrIV: 11027614-11027676 [-] UCSC Ensembl
Seed AAAUGCA
Precursor
(pre-Mir +30nt flank)		 
AGUUUGAAAAAUAAGUUCAAUUUUUGGAUCCCUGCAGUUUCGAUGAUUUUAUCCUUAAUUCUGAAGAUGUGAUAAAUGCAUCUUAACUGCGGUGAUCUAGAUCAUGAACACUUUUUUAAAAUUUA
Get precursor sequence
Structure
        10          20        30        40        50        60  
AGUUUGAAAAAUAAGUU--| AUU        C        UC    AU      CUUAAUUC 
                   CA   UUUGGAUC CUGCAGUU  GAUG  UUUAUC        \
                   GU   AGAUCUAG GGCGUCAA  CUAC  AAAUAG        U
AUUUAAAAUUUUUUCACAA^ ACU        U        UU    GU      UGUAGAAG 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-277_5p*
mirBase accessionMIMAT0020777
Sequence 
0- CCUGCAGUUUCGAUGAUUUUAUC -23
Get sequence
Mature sequence

Cel-Mir-277_3p
mirBase accessionMIMAT0000287
Sequence 
42- UAAAUGCAUCUUAACUGCGGUGA -65
Get sequence
Proposed targets microrna.org: MIMAT0000287
TargetScanWorm: cel-miR-232