MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-277-P4

Family name MIR-277 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-277-P3  Lan-Mir-277-P5 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01002950: 1829-1895 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P4)		 Mir-317-P10 LFEI01002950: 930-993 [+] Ensembl
Mir-277-P3 LFEI01002950: 1521-1587 [+] Ensembl
Mir-277-P4 LFEI01002950: 1829-1895 [+] Ensembl
Mir-34-P9 LFEI01002950: 2250-2306 [+] Ensembl
Seed AAAUGCA
Precursor
(pre-Mir +30nt flank)		 
UACCAGCAGUCUAACAUUAUCCAUGCCCAGAAUAUACCAGUAGUGCAUCCUACAUGUGACUGUUGCUAUGGUGUAAAUGCAUUAUCUGGUAUAUGACUGGUCCUGGAUACAUACAGCAGAGGUUACC
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Structure
        10         20        30         40         50        60   
UACCAGCAGUCUAACAU-      UGC    A-         -|       CC    UGUGACUG 
                  UAUCCA   CCAG  AUAUACCAG UAGUGCAU  UACA        \
                  AUAGGU   GGUC  UAUAUGGUC AUUACGUA  AUGU        U
CCAUUGGAGACGACAUAC      CCU    AG         U^       A-    GGUAUCGU 
     120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Star sequence

Lan-Mir-277-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAUAUACCAGUAGUGCAUCCUACA -24
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Mature sequence

Lan-Mir-277-P4_3p
mirBase accessionNone
Sequence 
43- UAAAUGCAUUAUCUGGUAUAUGAC -67
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