Mir-277

MirGeneDB ID

Lgi-Mir-277

Family name

MIR-277 (all species)

Species

Owl limpet (Lottia gigantea)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Ava-Mir-277-P10 Ava-Mir-277-P11 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cbr-Mir-277-P6a Cbr-Mir-277-P6b Cel-Mir-277 Csc-Mir-277-P18a Csc-Mir-277-P18b Cte-Mir-277-P1 Cte-Mir-277-P2 Dan-Mir-277 Dgr-Mir-277-P19 Dgr-Mir-277-P20 Dgr-Mir-277-P21 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Egr-Mir-277-P7 Egr-Mir-277-P8 Egr-Mir-277-P9 Esc-Mir-277 Gpa-Mir-277 Gsa-Mir-277-P8 Gsa-Mir-277-P9 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Isc-Mir-277 Lan-Mir-277-P3 Lan-Mir-277-P4 Lan-Mir-277-P5 Llo-Mir-277 Lpo-Mir-277-P12 Lpo-Mir-277-P13 Lpo-Mir-277-P14 Lpo-Mir-277-P15 Lpo-Mir-277-P16 Lpo-Mir-277-P17 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ofu-Mir-277-P22 Ofu-Mir-277-P23 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sma-Mir-277-P7 Sma-Mir-277-P8 Sme-Mir-277-P7a Sme-Mir-277-P7b Sme-Mir-277-P8a Sme-Mir-277-P8b Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Lotgi1)

LOTGIsca_10: 1145805-1145865 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-277)

Mir-277 LOTGIsca_10: 1145805-1145865 [+] Ensembl
Mir-34 LOTGIsca_10: 1151274-1151332 [+] Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

UGCAAAACACUUGAAAUGACCCUUGAACUCAGGUCCAGAUAUGCAUUUUACAUUGUUGUUUUUUGGUGUAAAUGCAUUUUCUGGUAUCUGAGGUUAACGGUAUGUAACUUCAAAACUAAAG

Get precursor sequence

Structure

        10          20        30         40         50         
UGCAAAACACUUGAAAUG--   C    A       -     U-|       U   UUGUUG 
                    ACC UUGA CUCAGGU CCAGA  AUGCAUUU ACA      U
                    UGG AAUU GAGUCUA GGUCU  UACGUAAA UGU      U
GAAAUCAAAACUUCAAUGUA   C    G       U     UU^       -   GGUUUU 
 .       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Lgi-Mir-277_5p* (predicted)

mirBase accession

None

Sequence

0- AGGUCCAGAUAUGCAUUUUACA -22

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Mature sequence

Lgi-Mir-277_3p

mirBase accession

None

Sequence

38- UAAAUGCAUUUUCUGGUAUCUGA -61

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