Mir-277-P17

MirGeneDB ID

Lpo-Mir-277-P17

Family name

MIR-277 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-277-P12 Lpo-Mir-277-P13 Lpo-Mir-277-P14 Lpo-Mir-277-P15 Lpo-Mir-277-P16

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cel-Mir-277 Dan-Mir-277 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Esc-Mir-277 Gpa-Mir-277 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Isc-Mir-277 Lgi-Mir-277 Llo-Mir-277 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665692.1: 440255-440315 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-277-P17)

Mir-277-P17 NW_013665692.1: 440255-440315 [+] Ensembl
Mir-34-P18 NW_013665692.1: 465877-465935 [+] Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

GCUCUCAAAUCCUACGUGGCCUUCGUAGUCUCAUUCCAGCGGUGCGUUUCCACGUCCAGCUUCGUCUGUAAAUGCAUCACCUGGAAUGAGUGUACGUGUAGGUAUUCACUUCGUUGUCCAU

Get precursor sequence

Structure

        10        20          30        40         50         
GCUCUCAAAUCCUACGUG    U--    GU          C-|        C  CGUCCA 
                  GCCU   CGUA  CUCAUUCCAG  GGUGCGUUU CA      G
                  UGGA   GCAU  GAGUAAGGUC  CUACGUAAA GU      C
UACCUGUUGCUUCACUUA    UGU    GU          CA^        U  CUGCUU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-277-P17_5p* (predicted)

mirBase accession

None

Sequence

0- UCAUUCCAGCGGUGCGUUUCCA -22

Get sequence

Mature sequence

Lpo-Mir-277-P17_3p

mirBase accession

None

Sequence

38- UAAAUGCAUCACCUGGAAUGAGU -61

Get sequence