Mir-277-P7b

MirGeneDB ID

Sme-Mir-277-P7b

Family name

MIR-277 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-277d

Paralogues

Sme-Mir-277-P7a Sme-Mir-277-P8a Sme-Mir-277-P8b

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cel-Mir-277 Dan-Mir-277 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Egr-Mir-277-P7 Esc-Mir-277 Gpa-Mir-277 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Isc-Mir-277 Lgi-Mir-277 Llo-Mir-277 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sma-Mir-277-P7 Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000268_dd_Smes_g4_268: 448831-448887 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-277-P7b)

Mir-277-P8b NNSW01000268_dd_Smes_g4_268: 448715-448777 [-] UCSC Ensembl
Mir-277-P7b NNSW01000268_dd_Smes_g4_268: 448831-448887 [-] UCSC Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

GGUAUUUAAAUUUUUUAAGCAUCAAAAAUGUUGGUUAGUUGUGCAUUUUCAUUAAAUAUUAUGUAAAUGCAUUUAUCUGGCCAAGAAAUAGUUGCUUUAAUCGUAAUAAUAUUAUUA

Get precursor sequence

Structure

        10            20        30        40          50      
GGUAUUUAAAUUUUUUA----    UCAAAAAUG        UU--|       U  UUAA 
                     AGCA         UUGGUUAG    GUGCAUUU CA    A
                     UCGU         AACCGGUC    UACGUAAA GU    U
AUUAUUAUAAUAAUGCUAAUU    UGAUAAAG-        UAUU^       U  AUUA 
     110       100        90         80        70        60