Mir-277-P10

MirGeneDB ID

Ava-Mir-277-P10

Family name

MIR-277 (all species)

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-277-P11

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cel-Mir-277 Dan-Mir-277 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Esc-Mir-277 Gpa-Mir-277 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Isc-Mir-277 Lgi-Mir-277 Llo-Mir-277 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

A. vaga

Node of Origin (family)

Protostomia

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075496.1: 6772799-6772860 [-] Ensembl

Seed

AAAUGCA

Precursor
(pre-Mir +30nt flank)

UAUAAAAUAAGCAUUCACGUUCGAUUGUUCGUGCCAGGUAGUGUUUUUGCACGCGAUUAAUAAGAAACUGUAAAUGCAUUGGUCUGGUACGAAUUAUCUAAACGACUUCGUCAUUGUCUACG

Get precursor sequence

Structure

        10         20         30         40        50          
UAUAAAAUAAGCAUUCA-    C-   U            -|     U      CGCGAUUA 
                  CGUU  GAU GUUCGUGCCAGG UAGUGU UUUGCA        \
                  GCAA  CUA UAAGCAUGGUCU GUUACG AAAUGU        A
GCAUCUGUUACUGCUUCA    AU   U            G^     U      CAAAGAAU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Ava-Mir-277-P10_5p*

mirBase accession

None

Sequence

0- GUGCCAGGUAGUGUUUUUGCA -21

Get sequence

Mature sequence

Ava-Mir-277-P10_3p

mirBase accession

None

Sequence

40- UAAAUGCAUUGGUCUGGUACGA -62

Get sequence