MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-317-P2

Family name MIR-317 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-317-P1 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold622: 468583-468640 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-317-P2)		 Mir-317-P1 scaffold622: 468076-468134 [+] Ensembl
Mir-317-P2 scaffold622: 468583-468640 [+] Ensembl
Mir-277 scaffold622: 474084-474143 [+] Ensembl
Mir-34 scaffold622: 474792-474856 [+] Ensembl
Seed GAACACA
Precursor
(pre-Mir +30nt flank)		 
UGAACGAAAGGGACUCUACUCAUGUGGGUGAAGGUACCAUUAGGUGUUCACAUAAUUAAUGUUGUGAACACAGCUGGUGGUAUCUUUUCUUCUGUGAGAGAAUUCGGCAAAAACUUCU
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Structure
        10          20        30        40          50       
UGAACGAAAGGGACUCUA--      UG  U              --|        UAAU 
                    CUCAUG  GG GAAGGUACCAUUAG  GUGUUCACA    U
                    GAGUGU  UC UUUCUAUGGUGGUC  CACAAGUGU    A
UCUUCAAAAACGGCUUAAGA      CU  U              GA^        UGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-317-P2_5p*
mirBase accessionNone
Sequence 
0- AAGGUACCAUUAGGUGUUCACA -22
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Mature sequence

Mgi-Mir-317-P2_3p
mirBase accessionNone
Sequence 
34- UGAACACAGCUGGUGGUAUCUUUU -58
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