| MirGeneDB ID | Npo-Mir-317 |
|---|---|
| Family name | MIR-317 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aae-Mir-317-P8 Aae-Mir-317-P9 Aga-Mir-317 Agr-Mir-317 Bge-Mir-317 Csc-Mir-317-P17 Csc-Mir-317-P18 Cte-Mir-317 Dan-Mir-317 Dgr-Mir-317-P3 Dgr-Mir-317-P4 Dlo-Mir-317 Dma-Mir-317 Dme-Mir-317 Dmo-Mir-317 Dpu-Mir-317 Dsi-Mir-317 Dya-Mir-317 Eba-Mir-317 Efe-Mir-317-P5 Efe-Mir-317-P6 Efe-Mir-317-P7 Esc-Mir-317 Gpa-Mir-317 Hme-Mir-317 Hru-Mir-317 Isc-Mir-317 Lan-Mir-317-P10 Lan-Mir-317-P11 Lgi-Mir-317 Lhy-Mir-317 Llo-Mir-317 Lpo-Mir-317-P12 Lpo-Mir-317-P13 Mgi-Mir-317-P1 Mgi-Mir-317-P2 Mom-Mir-317 Obi-Mir-317 Ofu-Mir-317 Ovu-Mir-317 Pau-Mir-317 Pca-Mir-317 Pdu-Mir-317 Pve-Mir-317 Rph-Mir-317 Snu-Mir-317 Tca-Mir-317 Tur-Mir-317 War-Mir-317 |
| Node of Origin (locus) | Protostomia |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000333.1: 1089799-1089857 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-317) |
Mir-34
JACATO010000333.1: 1074717-1074775 [-]
Ensembl
Mir-277 JACATO010000333.1: 1081096-1081159 [-] Ensembl Mir-317 JACATO010000333.1: 1089799-1089857 [-] Ensembl |
| Seed | GAACACA |
| Precursor (pre-Mir +30nt flank) |
GUGCUUGAAGAUAAGAUUGUCAUGCGUGACAGGGUACCAUGAUGUGUUCCCAGUGUGAUGACGUGUGAACACAGCUGGUGGUAUCUGGUCUUGUGUGAGCAGAACAACAAUUUCAGGACGet precursor sequence |
| Structure | 10 20 30 40 50 GUGCUUGAAGAUAAGAU- - U A GA--| C GUGUG UG UCAUGCG GAC GGGUACCAU UGUGUUC CA \ AC AGUGUGU CUG UCUAUGGUG ACACAAG GU A CAGGACUUUAACAACAAG G U G GUCG^ U GCAGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Npo-Mir-317_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGGUACCAUGAUGUGUUCCCA -22
Get sequence
|
| Mature sequence | Npo-Mir-317_3p (predicted) |
| mirBase accession | None |
| Sequence |
35- UGAACACAGCUGGUGGUAUCUGGU -59
Get sequence
|
