Mir-317

MirGeneDB ID

Pve-Mir-317

Family name

MIR-317 (all species)

Species

Vernerds tusk shell (Pictodentalium vernedei)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-317-P8 Aae-Mir-317-P9 Aga-Mir-317 Agr-Mir-317 Bge-Mir-317 Csc-Mir-317-P17 Csc-Mir-317-P18 Cte-Mir-317 Dan-Mir-317 Dgr-Mir-317-P3 Dgr-Mir-317-P4 Dlo-Mir-317 Dma-Mir-317 Dme-Mir-317 Dmo-Mir-317 Dpu-Mir-317 Dsi-Mir-317 Dya-Mir-317 Eba-Mir-317 Efe-Mir-317-P5 Efe-Mir-317-P6 Efe-Mir-317-P7 Esc-Mir-317 Gpa-Mir-317 Hme-Mir-317 Hru-Mir-317 Isc-Mir-317 Lan-Mir-317-P10 Lan-Mir-317-P11 Lgi-Mir-317 Lhy-Mir-317 Llo-Mir-317 Lpo-Mir-317-P12 Lpo-Mir-317-P13 Mgi-Mir-317-P1 Mgi-Mir-317-P2 Mom-Mir-317 Npo-Mir-317 Obi-Mir-317 Ofu-Mir-317 Ovu-Mir-317 Pau-Mir-317 Pca-Mir-317 Pdu-Mir-317 Rph-Mir-317 Snu-Mir-317 Tca-Mir-317 Tur-Mir-317 War-Mir-317

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Pve_genome_chr_only)

Pve_Chr1: 328172986-328173046 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-317)

Mir-277 Pve_Chr1: 328149629-328149686 [-] Ensembl
Mir-317 Pve_Chr1: 328172986-328173046 [-] Ensembl

Seed

GAACACA

Precursor
(pre-Mir +30nt flank)

UGGGUAACUUAUAUAUUUUUCAUGUGGACUAAGGUACCAUUCUGGGUUCGCAGUGAAUUGAAUUAUGUGAACACAGCUGGUGGUAUCUUGCUUGAUGUGAAAUAAAUCUACAGUAAACAGA

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Structure

        10          20        30        40          50         
UGGGUAACUUAUAUAUU--        G  C            --|  G       GUGAAU 
                   UUUCAUGU GA UAAGGUACCAUU  CUG GUUCGCA      \
                   AAAGUGUA UU GUUCUAUGGUGG  GAC CAAGUGU      U
AGACAAAUGACAUCUAAAU        G  C            UC^  A       AUUAAG 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Pve-Mir-317_5p*

mirBase accession

None

Sequence

0- AAGGUACCAUUCUGGGUUCGCA -22

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Mature sequence

Pve-Mir-317_3p

mirBase accession

None

Sequence

37- UGAACACAGCUGGUGGUAUCUUGC -61

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