MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-317

Family name MIR-317 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000004.1: 52017423-52017482 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)		 Mir-317 JAPTHN010000004.1: 52017423-52017482 [+] Ensembl
Mir-277 JAPTHN010000004.1: 52020821-52020880 [+] Ensembl
Mir-34 JAPTHN010000004.1: 52046696-52046759 [+] Ensembl
Seed GAACACA
Precursor
(pre-Mir +30nt flank)		 
AGAAGAUUUUUAUAAUUGCUUGUGUACAACAGAGUACUCCAGCGUGGUCGCAUGUUGUUAAAGUGUGAACACAGCUGGUGGUAUCUCUUUUGUAUACAAUGCAUAGCAACAGUCGCCAUG
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Structure
        10          20        30          40         50        
AGAAGAUUUUUAUAAUU-  -          C    -    -     -|  G     UGUUG 
                  GC UUGUGUACAA AGAG UACU CCAGC GUG UCGCA     \
                  CG AACAUAUGUU UCUC AUGG GGUCG CAC AGUGU     U
GUACCGCUGACAACGAUA  U          U    U    U     A^  A     GAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-317_5p*
mirBase accessionNone
Sequence 
0- AGAGUACUCCAGCGUGGUCGCA -22
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Mature sequence

Pdu-Mir-317_3p
mirBase accessionNone
Sequence 
35- UGAACACAGCUGGUGGUAUCUCUUU -60
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