MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-317-P11

Family name MIR-317 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-317-P10 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01001564: 14832-14895 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317-P11)		 Mir-34-P10 LFEI01001564: 13827-13883 [-] Ensembl
Mir-277-P5 LFEI01001564: 14238-14304 [-] Ensembl
Mir-317-P11 LFEI01001564: 14832-14895 [-] Ensembl
Seed GAACACA
Precursor
(pre-Mir +30nt flank)		 
AAUGGAGGACAGUUUAUUCUCAUGAAGACAAAGGUAUCACUGUGUGUUCGCAGUUUUAUGAAAACUCCUGUGAACACAGCUGGUGGUAUCUCUAUCUCCAUGAUGACUUGCAACUUUAGGAGAA
Get precursor sequence
Structure
        10          20        30        40          50        60
AAUGGAGGACAGUUUAU-  -     A   CAA          - -|         GUUUUAU 
                  UC UCAUG AGA   AGGUAUCACU G UGUGUUCGCA       G
                  AG AGUAC UCU   UCUAUGGUGG C ACACAAGUGU       A
AAGAGGAUUUCAACGUUC  U     C   AUC          U G^         CCUCAAA 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Lan-Mir-317-P11_5p*
mirBase accessionNone
Sequence 
0- AAGGUAUCACUGUGUGUUCGCA -22
Get sequence
Mature sequence

Lan-Mir-317-P11_3p
mirBase accessionNone
Sequence 
40- UGAACACAGCUGGUGGUAUCUCUA -64
Get sequence