MirGeneDB ID | Ovu-Mir-317 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-317-P8
Aae-Mir-317-P9
Bge-Mir-317
Cgi-Mir-317-P1
Cgi-Mir-317-P2
Csc-Mir-317-P17
Csc-Mir-317-P18
Cte-Mir-317
Dan-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Efe-Mir-317-P5
Efe-Mir-317-P6
Efe-Mir-317-P7
Esc-Mir-317
Hme-Mir-317
Isc-Mir-317
Lan-Mir-317-P10
Lan-Mir-317-P11
Lgi-Mir-317
Lpo-Mir-317-P12
Lpo-Mir-317-P13
Npo-Mir-317
Obi-Mir-317
Tca-Mir-317
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01053798.1: 41967-42026 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGUAGACAGAAUGAAAUACUCUGGCAGACGUGGGUACCAUAGUGUGUUUGCAGUACUACCCCUGUGUGAACACAGCUGGUGGUAUCUGGUUCUGUUUGAGCAAUCUCUUCUCAUCAUAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUAGACAGAAUGAAAUA-- UG CG - -| UG GUACU
CUC GCAGA UGGGUACCA UAG UGUGUU CA A
GAG UGUCU GUCUAUGGU GUC ACACAA GU C
CGAUACUACUCUUCUCUAAC UU UG G G^ GU GUCCC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Mir-317_5p* |
mirBase accession | None |
Sequence |
0- UGGGUACCAUAGUGUGUUUGCA -22
Get sequence
|
Mature sequence |
Ovu-Mir-317_3p |
mirBase accession | None |
Sequence |
36- UGAACACAGCUGGUGGUAUCUGGU -60
Get sequence
|