MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-1817

Family name MIR-1817 (all species)
Seed AGCCAAU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-1817
Paralogues
Orthologues Cel-Mir-1817 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(CB4)
I: 11435405-11435486 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAAAAAGAAAUCCAUUCAUAUUUUGAGCAGCCAAUGCCACGACUGUCAUGGUCUAAAAAUCCGAUAGCUGGAUAAUCCGAUAGUUCAUGACAGUGGUACAUUGUCUACUCGAAAUUUUUGAAAGAUACGUGUACGUAUA
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Structure
        10        20          30        40        50        60        70 
UGCAAAAAAGAAAUCCAU   U--|       C  C     CC  G         GUCUAAAAAUCCGAUAG 
                  UCA   AUUUUGAG AG CAAUG  AC ACUGUCAUG                 \
                  AGU   UAAAGCUC UC GUUAC  UG UGACAGUAC                 C
AUAUGCAUGUGCAUAGAA   UUU^       A  U     A-  G         UUGAUAGCCUAAUAGGU 
140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-1817_5p

mirBase accessionMIMAT0011486
Sequence
0- CAGCCAAUGCCACGACUGUCAUG -23
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Star sequence

Cbr-Mir-1817_3p*

mirBase accessionNone
Sequence
60- UGACAGUGGUACAUUGUCUACU -82
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