MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-54-P3

Family name MIR-54 (all species)
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-56
Paralogues Cel-Mir-54-P1  Cel-Mir-54-P2 
Orthologues Asu-Mir-54-o3  Cbr-Mir-54-P3 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Chromadorea
Genome context
(ce11)		 chrX: 13144706-13144770 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P3)		 Mir-54-P3 chrX: 13144706-13144770 [-] UCSC Ensembl
Mir-54-P2 chrX: 13144842-13144902 [-] UCSC Ensembl
Mir-54-P1 chrX: 13145011-13145076 [-] UCSC Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
GUGAGUUGGAACGGAGCCAGUGUCUGUUCUUGGCGGAUCCAUUUUGGGUUGUACCUCAUCCUAAAUUUGACGGUACCCGUAAUGUUUCCGCUGAGAACCGACUGUGCACCACUUUGCCCAUUGGA
Get precursor sequence
Structure
        10          20        30        40        50        60   
GUGAGUUGGAACGGAGC--| GU   U     UG     UC    U     UGU   UCAUCCU 
                   CA  GUC GUUCU  GCGGA  CAUU UGGGU   ACC       A
                   GU  CAG CAAGA  CGCCU  GUAA GCCCA   UGG       A
AGGUUACCCGUUUCACCAC^ GU   C     GU     UU    U     ---   CAGUUUA 
   120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-54-P3_5p*
mirBase accessionMIMAT0000027
Sequence 
0- UGGCGGAUCCAUUUUGGGUUGUACC -25
Get sequence
Proposed targets microrna.org: MIMAT0000027
Mature sequence

Cel-Mir-54-P3_3p
mirBase accessionMIMAT0000028
Sequence 
43- UACCCGUAAUGUUUCCGCUGAG -65
Get sequence
Proposed targets microrna.org: MIMAT0000028
TargetScanWorm: cel-miR-56