MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-54-P1

Family name MIR-54 (all species)
Seed ACCCGUA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-54
Paralogues Cel-Mir-54-P2  Cel-Mir-54-P3 
Orthologues Asu-Mir-54-o1  Cbr-Mir-54-P1a  Cbr-Mir-54-P1b-v1  Cbr-Mir-54-P1b-v2  Cbr-Mir-54-P1c 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Chromadorea
Genome context
(ce11)		 chrX: 13145011-13145076 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P1)		 Mir-54-P3 chrX: 13144706-13144770 [-] UCSC Ensembl
Mir-54-P2 chrX: 13144842-13144902 [-] UCSC Ensembl
Mir-54-P1 chrX: 13145011-13145076 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAUUGGUAAUGUGAGUCGCGCUCUGACUAGGAUAUGAGACGACGAGAACAUUGCUUUUUUAAAAGACUUGUACCCGUAAUCUUCAUAAUCCGAGUCAGGGCUAGCUGACCAUAAACAUGCCUUC
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Structure
        10        20          30          40        50        60 
GGAAUUGGUAAUGUGAGUC  --         A   -    -|  CG   AGA   UUGCUUUU 
                   GC  GCUCUGACU GGA UAUG AGA  ACG   ACA        U
                   CG  CGGGACUGA CCU AUAC UCU  UGC   UGU        U
CUUCCGUACAAAUACCAGU  AU         G   A    U^  AA   CCA   UCAGAAAA 
    120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-54-P1_5p*
mirBase accessionMIMAT0020773
Sequence 
0- AGGAUAUGAGACGACGAGAACA -22
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Mature sequence

Cel-Mir-54-P1_3p
mirBase accessionMIMAT0000025
Sequence 
42- UACCCGUAAUCUUCAUAAUCCGAG -66
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Proposed targets microrna.org: MIMAT0000025
TargetScanWorm: cel-miR-54