MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-54-P1c

Family name MIR-54 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-54d
Paralogues Cbr-Mir-54-P1a  Cbr-Mir-54-P1b-v1  Cbr-Mir-54-P2  Cbr-Mir-54-P3 
Orthologues Asu-Mir-54-o1  Cel-Mir-54-P1 
Node of Origin (locus) C. briggsae
Node of Origin (family) Chromadorea
Genome context
(CB4)		 X: 16964087-16964152 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P1c)		 Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
UUUUUCUAAAGCGCUAGGUGAUCCUUGACUAGGAUAUAAAAAGAACGUGUGUACAUGAAUCCAGUGAAUACUUGUACCCGUAUUUUUAUAUCCGAGCCAAGGAUUGCCGUUGAUCGUUUUCCCCUU
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Structure
        10          20        30        40        50        60    
UUUUUCUAAAGCGCUAG--|UG       A  A           GA   UGU     UGAAUCCA 
                   G  AUCCUUG CU GGAUAUAAAAA  ACG   GUACA        \
                   C  UAGGAAC GA CCUAUAUUUUU  UGC   CAUGU        G
UUCCCCUUUUGCUAGUUGC^GU       C  G           A-   C--     UCAUAAGU 
    120       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-54-P1c_5p*
mirBase accessionNone
Sequence 
0- AGGAUAUAAAAAGAACGUGUGUACA -25
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Mature sequence

Cbr-Mir-54-P1c_3p
mirBase accessionMIMAT0011496
Sequence 
44- UACCCGUAUUUUUAUAUCCGAG -66
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