MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-54-P2

Family name MIR-54 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-55
Paralogues Cbr-Mir-54-P1a  Cbr-Mir-54-P1b-v1  Cbr-Mir-54-P1c  Cbr-Mir-54-P3 
Orthologues Asu-Mir-54-o2  Cel-Mir-54-P2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Chromadorea
Genome context
(CB4)		 X: 16963478-16963540 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P2)		 Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
GCCAAAAUUGAAUCGUCACAAAGGGGGACUCGGCGGAAAAUAUGGUGGUAUACUACACAGUGAAUAGAUAUACCCGUAUAUUUUUCUGCCGAGCCCCUCCACGACAUCAAUAAGGCCGACACG
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Structure
        10        20           30        40         50        60
GCCAAAAUUGAAUCGUCACAAA---|    A            -    GU      CUACACA 
                         GGGGG CUCGGCGGAAAA UAUG  GGUAUA       G
                         UCCCC GAGCCGUCUUUU AUAU  CCAUAU       U
GCACAGCCGGAAUAACUACAGCACC^    -            U    GC      AGAUAAG 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-54-P2_5p*
mirBase accessionNone
Sequence 
0- CGGCGGAAAAUAUGGUGGUAUA -22
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Mature sequence

Cbr-Mir-54-P2_3p
mirBase accessionMIMAT0001310
Sequence 
40- UACCCGUAUAUUUUUCUGCCGAG -63
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