| MirGeneDB ID | Asu-Mir-54-o1 |
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| Family name |
MIR-54 (all species) |
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| Seed |
ACCCGUA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-56
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| Paralogues |
Asu-Mir-54-o2
Asu-Mir-54-o3
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| Orthologues |
Cbr-Mir-54-P1a
Cbr-Mir-54-P1b-v1
Cbr-Mir-54-P1b-v2
Cbr-Mir-54-P1c
Cel-Mir-54-P1
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Chromadorea
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Genome context
(ASU_PRJNA80881_plustraces) |
C4628901: 434-493 [+]
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Precursor
(pre-Mir +30nt flank) |
UUGUGCGAUGGGUGUGCGGUCGUCUGGAGCCGGGUGGCAGACUAUCUGGGUAUGUGCAUAUAUAUUCAUACCCGUAAGUCUCCAUCGAGCUCCGGCUGUCGGUUCGCCUACAUGUGCCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUGUGCGAUGGGUGUGC---| U U CG C AUC UGCAU
GG CG CUGGAGC GGUGG AGACU UGGGUAUG A
CU GU GGCCUCG CUACC UCUGA GCCCAUAC U
UUCCGUGUACAUCCGCUUGG^ - C AG - AU- UUAUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-54-o1_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGGUGGCAGACUAUCUGGGUAUG -24
Get sequence
|
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| Mature sequence |
Asu-Mir-54-o1_3p |
| mirBase accession | MIMAT0021463 |
|---|
| Sequence |
38- UACCCGUAAGUCUCCAUCGAGC -60
Get sequence
|
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