| MirGeneDB ID | Cbr-Mir-787 |
|---|
| Family name |
MIR-787 (all species) |
|---|
| Seed |
AAGCUCG |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
cbr-mir-787
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cel-Mir-787
|
|---|
| Node of Origin (locus) |
Caenorhabditis
|
|---|
| Node of Origin (family) |
Caenorhabditis
|
|---|
Genome context
(CB4) |
X: 5308354-5308415 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUCUCUGAAAAUCCCCUCAAAAUGGAGAAGAAGGAAACUAGACAAUCUUACAUAGCUCAAAAUAAUCUGUAAGCUCGUCUUAGUUUUCCUCUCCUCUCUAGGGAAUAUUGAUUGGUAAGAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUCUGAAAAUCCCCUCAAAA -- A -| AAU UAGCUCA
UGGAGA AGA GGAAACU AGAC CUUACA \
AUCUCU UCU CUUUUGA UCUG GAAUGU A
UUAGAAUGGUUAGUUAUAAGGG CC C U^ CUC CUAAUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cbr-Mir-787_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAGGAAACUAGACAAUCUUACA -22
Get sequence
|
|---|
| Mature sequence |
Cbr-Mir-787_3p |
| mirBase accession | MIMAT0004288 |
|---|
| Sequence |
39- UAAGCUCGUCUUAGUUUUCCUCU -62
Get sequence
|
|---|
