MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-253

Family name MIR-253 (all species)
Seed UAGUAGG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-253
Paralogues
Orthologues Cbr-Mir-253 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrV: 5780532-5780596 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUAUUUAGAAUUGUUCCGAUCGCCGCUCUUUUCACACACCUCACUAACACUGACCACCGAUGCAUAGAUGUUAGUAGGCGUUGUGGGAAGGGCGGCGACAGUGAACGUCGUUUCUCAUUAUA
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Structure
        10        20          30         40        50        60  
UAUUUAUUUAGAAUUGUUCCGA--           UU   -| A   C       CUGACCACC 
                        UCGCCGCUCUU  CAC AC CCU ACUAACA         \
                        AGCGGCGGGAA  GUG UG GGA UGAUUGU         G
AUAUUACUCUUUGCUGCAAGUGAC           GG   U^ C   -       AGAUACGUA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-253_5p*

mirBase accessionMIMAT0000309
Sequence
0- CUUUUCACACACCUCACUAACA -22
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Proposed targets microrna.org: MIMAT0000309
Mature sequence

Cel-Mir-253_3p

mirBase accessionMIMAT0004215
Sequence
43- UUAGUAGGCGUUGUGGGAAGGG -65
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Proposed targets microrna.org: MIMAT0004215
TargetScanWorm: cel-miR-253