MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-392-v1

Family name MIR-392 (all species)
Seed UCAUCGA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-392
Paralogues Cel-Mir-392-v2 
Orthologues Cbr-Mir-392 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)
chrX: 13597261-13597319 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-392-v1)
Mir-392-v1 chrX: 13597261-13597319 [+] UCSC Ensembl
Mir-392-v2 chrX: 13597261-13597319 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUGAAAAUCUCGCAGACGUGUUCAGUCAGCAUUCGUGGUUGAGGAUAUCGAACACAAAAAAAGAUAUCAUCGAUCACGUGUGAUGACAGAUUUUCUGCGACUAACAGGUUUGCUUA
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Structure
        10        20          30        40        50         
UUUUUGAAAAUCUCGCAGACGUGUUCA--|   G   U         G     CGAACAC 
                             GUCA CAU CGUGGUUGA GAUAU       \
                             CAGU GUG GCACUAGCU CUAUA       A
AUUCGUUUGGACAAUCAGCGUCUUUUAGA^   A   U         A     GAAAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-392-v1_5p*

mirBase accessionMIMAT0020344
Sequence
0- AGCAUUCGUGGUUGAGGAUAU -21
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Mature sequence

Cel-Mir-392-v1_3p

mirBase accessionMIMAT0000768
Sequence
38- AUCAUCGAUCACGUGUGAUGA -59
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Proposed targets microrna.org: MIMAT0000768
TargetScanWorm: cel-miR-392