MirGeneDB 3.0
MirGeneDB ID

Cbr-Bantam-P1b

Family name BANTAM (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-58b
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o1  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cel-Bantam-P1  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 IV: 149584-149644 [+] Ensembl
Seed GAGAUCA
Precursor
(pre-Mir +30nt flank)		 
CUAUAUAAAAAUUGAAAUUUUCAAUACGUUGGCUUUUUGGCUGGUCUCAUACCGUUUAGUACUGGAUAUGAGAUCAUUCAAGAAGCCCAAAAAAGAGUUCAUUUCAUUCGAAACAUGCUAU
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Structure
        10        20        30            40        50         
CUAUAUAAAAAUUGAAAUUUUCAAUACGUU----|        GC          CCGUUUA 
                                  GGCUUUUUG  UGGUCUCAUA       \
                                  CCGAAGAAC  ACUAGAGUAU       G
UAUCGUACAAAGCUUACUUUACUUGAGAAAAAAC^        UU          AGGUCAU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Bantam-P1b_5p*
mirBase accessionNone
Sequence 
0- GGCUUUUUGGCUGGUCUCAUA -21
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Mature sequence

Cbr-Bantam-P1b_3p
mirBase accessionMIMAT0011482
Sequence 
38- UGAGAUCAUUCAAGAAGCCCAAA -61
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