| MirGeneDB ID | Sme-Bantam-P20 |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-bantam-c-1
|
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| Paralogues |
Sme-Bantam-P18
Sme-Bantam-P19
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| Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000102_dd_Smes_g4_102: 1106013-1106065 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUCAUUUUGAUGGAACAGUUAUAGUUUAAAGGCUUUCAUUAUGAUUUUAAAAUGUUAUUUUGAGAUCAUUAUGAAAGCUUUUUACUGUAGACAUUAAUCAUCAACAUCUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUCAUUUUGAUGGAACA-- -| UU U AUG
GUU AUAGU AAAGGCUUUCAU AUGAUUUUAAA \
CAG UGUCA UUUUCGAAAGUA UACUAGAGUUU U
AUUUCUACAACUACUAAUUA A^ U- U UAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Bantam-P20_5p* |
| mirBase accession | MIMAT0012086 |
|---|
| Sequence |
0- AGGCUUUCAUUAUGAUUUUAAA -22
Get sequence
|
|---|
| Mature sequence |
Sme-Bantam-P20_3p |
| mirBase accession | MIMAT0003951 |
|---|
| Sequence |
31- UGAGAUCAUUAUGAAAGCUUUU -53
Get sequence
|
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