MirGeneDB 3.0
MirGeneDB ID

Sme-Bantam-P18

Family name BANTAM (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-bantam-a
Paralogues Sme-Bantam-P19  Sme-Bantam-P20 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000048_dd_Smes_g4_48: 1523214-1523273 [-] UCSC Ensembl
Seed GAGAUCA
Precursor
(pre-Mir +30nt flank)		 
AGAAAAUUCGGUAAGAUUUUGUCAUCAUAUUGGUUUUACUAGUGAUCUAAGAAUGAUAUAUAAAAAUCUGAGAUCACUAUGAAAGCUGGUAAAAUGACAGUGGGCAACAUCAAAGUUUAA
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Structure
        10          20        30        40        50         
AGAAAAUUCGGUAAGAUU--|      CA   UG     AC         A   AUGAUA 
                    UUGUCAU  UAU  GUUUU  UAGUGAUCU AGA      U
                    GACAGUA  AUG  CGAAA  AUCACUAGA UCU      A
AAUUUGAAACUACAACGGGU^      AA   GU     GU         G   AAAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Bantam-P18_5p*
mirBase accessionNone
Sequence 
0- UGGUUUUACUAGUGAUCUAAGA -22
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Mature sequence

Sme-Bantam-P18_3p
mirBase accessionMIMAT0003949
Sequence 
38- UGAGAUCACUAUGAAAGCUGGU -60
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