| MirGeneDB ID | Efe-Bantam-P8 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Seed |
GAGAUCA |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Bantam-P6
Efe-Bantam-P7
|
|---|
| Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Efe_combined) |
Efet.01.377353: 2266-2325 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
NNNNNNNNNACCGACUGAACCGUGUCAAGUCGGCUUUCGCACUGAUUGCCCAGAUGAUCCUUGACCUCUGAGAUCACUGUGAAAACCGACUGAGGCCGGUCAGAGCGACGCAGCAGCGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
NNNNNNNNNACCGACUGA--| U A- C C GCC UGAUC
ACCG GUC AGUCGG UUUCGCA UGAUU CAGA C
UGGC CGG UCAGCC AAAGUGU ACUAG GUCU U
CAGCGACGACGCAGCGAGAC^ - AG A C A-- CCAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Bantam-P8_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCUUUCGCACUGAUUGCCCAGA -24
Get sequence
|
|---|
| Mature sequence |
Efe-Bantam-P8_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGAUCACUGUGAAAACCGAC -60
Get sequence
|
|---|
