| MirGeneDB ID | Ava-Bantam-P23 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Bantam-P24
|
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| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 11671895-11671959 [+]
Ensembl
|
|---|
| Seed |
GAGAUUA |
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAUGAAACGCUUGUUGGAAAGAUGUGGCCAGUUCUUGUGAUAGUCCUCAAAUCGAGAUUGAAUUUAUUUUUUGAGAUUAUCACGAAAGCUGGUCGCACAAGUGUUUGUUCGUUCAAUGUUUCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGAUGAAACGCUUGUUGGAAAGA--| C C UCGAGAUU
UGUGGCCAGUU UUGUGAUAGUC UCAAA G
ACGCUGGUCGA AGCACUAUUAG AGUUU A
GCUUUGUAACUUGCUUGUUUGUGAAC^ A - UUUAUUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
|---|
| Star sequence |
Ava-Bantam-P23_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUUCUUGUGAUAGUCCUCAAAU -24
Get sequence
|
|---|
| Mature sequence |
Ava-Bantam-P23_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UGAGAUUAUCACGAAAGCUGGU -65
Get sequence
|
|---|
