Mir-315

MirGeneDB ID

Isc-Mir-315

Family name

MIR-315 (all species)

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-315

Paralogues

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Ava-Mir-315-P7 Ava-Mir-315-P8 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dgr-Mir-315-P1 Dgr-Mir-315-P2 Dlo-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Mgi-Mir-315-v1 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pdu-Mir-315 Pfl-Mir-315 Pma-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tca-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609883.1: 67654346-67654405 [+] Ensembl

Seed

UUUGAUU

Precursor
(pre-Mir +30nt flank)

UCGUCGAGAUCUGCGGUACUCCUUCUCAGCUUUUGAUUGUUGCUCAGAAGGCGUGGCAAUCUGACAAGCCUUCGAGUGACUAUCAAAUCUUGUGGAGACGCCAAUUCGUCAUAUCAAGCC

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Structure

        10        20          30        40        50          
UCGUCGAGAUCUGCGGUACUC--|   U   CU      U  UG   A      GUGGCAA 
                       CUUC CAG  UUUGAU GU  CUC GAAGGC       \
                       GAGG GUU  AAACUA CA  GAG CUUCCG       U
CCGAACUAUACUGCUUAACCGCA^   U   CU      U  GU   -      AACAGUC 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Mature sequence

Isc-Mir-315_5p

mirBase accession

MIMAT0012698

Sequence

0- UUUUGAUUGUUGCUCAGAAGGCG -23

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Star sequence

Isc-Mir-315_3p*

mirBase accession

None

Sequence

38- CCUUCGAGUGACUAUCAAAUCU -60

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