Mir-315

MirGeneDB ID

Tca-Mir-315

Family name

MIR-315 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-315

Paralogues

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Ava-Mir-315-P7 Ava-Mir-315-P8 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dgr-Mir-315-P1 Dgr-Mir-315-P2 Dlo-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Mgi-Mir-315-v1 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pdu-Mir-315 Pfl-Mir-315 Pma-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Tcas5.2)

LGX: 1327607-1327665 [-] Ensembl

Seed

UUUGAUU

Precursor
(pre-Mir +30nt flank)

AGGAGACGACGAGCCUGCAGUUCCUUUUGCUUUUGAUUGUUGCUCAGAAAGCCGGGUGUUAGAAAGGCUUUCGGGCAAUAAUCAUUUCCAAAGAGGACUCGUCACAACUCGCUUCGUUU

Get precursor sequence

Structure

        10          20        30         40        50         
AGGAGACGACGAGCCUGC--|  U      GCUUU-            A       GGGUG 
                    AGU CCUUUU      UGAUUGUUGCUC GAAAGCC     U
                    UCA GGAGAA      ACUAAUAACGGG CUUUCGG     U
UUUGCUUCGCUCAACACUGC^  -      ACCUUU            -       AAAGA 
       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-315_5p

mirBase accession

MIMAT0010096

Sequence

0- UUUUGAUUGUUGCUCAGAAAGCC -23

Get sequence

Star sequence

Tca-Mir-315_3p*

mirBase accession

None

Sequence

37- CUUUCGGGCAAUAAUCAUUUCC -59

Get sequence