MirGeneDB ID | Cbr-Mir-315 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-315
Bge-Mir-315
Bpl-Mir-315
Cel-Mir-315
Cgi-Mir-315-v1
Cgi-Mir-315-v2
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Efe-Mir-315
Esc-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Lpo-Mir-315-P6-v2
Npo-Mir-315
Obi-Mir-315
Ovu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Sko-Mir-315
Sme-Mir-315
Tca-Mir-315
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
|
Genome context (CB4) |
IV: 11729321-11729388 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAUAUUCCAAAACCAUCUCUGACUUCAAUUUUUUGAUUGCUCGUCGAUGUUGUCGAAGACACAAAAAAUUCUAUCGAAUCAUCGAAAACAAUCAAAGAAUGGAGUGAUUGAGAUACUUUUUCAACAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUAUUCCAAAACCAUCUCUG--| A CUCG UUG AAGACACAA
ACUUCA UUUUUUGAUUG UCGAUG UCG \
UGAGGU AAGAAACUAAC AGCUAC AGC A
AUACAACUUUUUCAUAGAGUUAG^ - AAA- UA- UAUCUUAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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01 |
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10 |
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Cb |
Ea |
Ma |
Yo |
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Mature sequence |
Cbr-Mir-315_5p |
mirBase accession | None |
Sequence |
0- UUUUGAUUGCUCGUCGAUGUUGUCG -25
Get sequence
|
Star sequence |
Cbr-Mir-315_3p* |
mirBase accession | None |
Sequence |
46- AAUCAUCGAAAACAAUCAAAGA -68
Get sequence
|