MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID
Paralogues
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cel-Mir-315  Cgi-Mir-315-v1  Cgi-Mir-315-v2  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Sko-Mir-315  Sme-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CB4)
IV: 11729321-11729388 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUAUUCCAAAACCAUCUCUGACUUCAAUUUUUUGAUUGCUCGUCGAUGUUGUCGAAGACACAAAAAAUUCUAUCGAAUCAUCGAAAACAAUCAAAGAAUGGAGUGAUUGAGAUACUUUUUCAACAUA
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Structure
        10        20          30        40        50        60     
GAUAUUCCAAAACCAUCUCUG--|     A           CUCG      UUG   AAGACACAA 
                       ACUUCA UUUUUUGAUUG    UCGAUG   UCG         \
                       UGAGGU AAGAAACUAAC    AGCUAC   AGC         A
AUACAACUUUUUCAUAGAGUUAG^     -           AAA-      UA-   UAUCUUAAA 
      120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-315_5p

mirBase accessionNone
Sequence
0- UUUUGAUUGCUCGUCGAUGUUGUCG -25
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Star sequence

Cbr-Mir-315_3p*

mirBase accessionNone
Sequence
46- AAUCAUCGAAAACAAUCAAAGA -68
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