MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-315

Family name MIR-315 (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-315
Paralogues
Orthologues Aae-Mir-315  Aga-Mir-315  Agr-Mir-315  Ava-Mir-315-P7  Ava-Mir-315-P8  Bge-Mir-315  Bko-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dgr-Mir-315-P1  Dgr-Mir-315-P2  Dlo-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Eba-Mir-315  Efe-Mir-315  Esc-Mir-315  Gpa-Mir-315  Gsp-Mir-315  Hru-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lhy-Mir-315  Llo-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Mgi-Mir-315-v1  Mom-Mir-315  Nag-Mir-315  Npo-Mir-315  Obi-Mir-315  Ofu-Mir-315  Ovu-Mir-315  Pau-Mir-315  Pca-Mir-315  Pcr-Mir-315  Pdu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Pve-Mir-315  Rph-Mir-315  Sko-Mir-315  Sne-Mir-315  Snu-Mir-315  Tca-Mir-315  Tur-Mir-315  War-Mir-315 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000017_dd_Smes_g4_17: 5952889-5952952 [-] UCSC Ensembl
Seed UUUGAUU
Precursor
(pre-Mir +30nt flank)		 
GAUUGACACAGUUGAGCGAGGCUUAUAGAAUUUUGAUUGUUGCUCUGAGAGUUAAUAUAAUUUCAAUGAUAACUGUCUAACAACCAUCAAAUUUCAAAGCGAUGCUUGUCAUCGGGUCCCCGAA
Get precursor sequence
Structure
        10        20            30        40        50        60  
GAUUGACACAGUUGAGCGAG----|   AUA   U      U    CUCU  G    AAUAUAAU 
                        GCUU   GAA UUUGAU GUUG    GA AGUU        \
                        CGAA   CUU AAACUA CAAC    CU UCAA        U
AAGCCCCUGGGCUACUGUUCGUAG^   A--   U      C    AAU-  G    UAGUAACU 
  120       110       100          90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-315_5p
mirBase accessionMIMAT0011282
Sequence 
0- UUUUGAUUGUUGCUCUGAGAGUU -23
Get sequence
Star sequence

Sme-Mir-315_3p*
mirBase accessionMIMAT0012167
Sequence 
42- CUGUCUAACAACCAUCAAAUUU -64
Get sequence