Mir-315

MirGeneDB ID

Pma-Mir-315

Family name

MIR-315 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-315

Paralogues

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Ava-Mir-315-P7 Ava-Mir-315-P8 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dgr-Mir-315-P1 Dgr-Mir-315-P2 Dlo-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Mgi-Mir-315-v1 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pdu-Mir-315 Pfl-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tca-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046082.1: 2604184-2604244 [+] UCSC Ensembl

Seed

UUUGAUU

Precursor
(pre-Mir +30nt flank)

UGCGACCUCCGACCUGCCGCGUUGUUCCCGAUUUGAUUGUUGCUCAGAAAGCCGUGAAUUGAACGUCGACUUUCGGGCAUCAAUCAAAACGGGAGGCGCGGCCCAGCCAGCACAGGAGCCA

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Structure

        10            20        30        40        50        60
UGCGACCUCCGACCUGC----|    UG      A        U     A     C  UGAAU 
                     CGCGU  UUCCCG UUUGAUUG UGCUC GAAAG CG     U
                     GCGCG  GAGGGC AAACUAAC ACGGG CUUUC GC     G
ACCGAGGACACGACCGACCCG^    --      A        U     -     A  UGCAA 
 .       110       100          90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-315_5p

mirBase accession

MIMAT0019539

Sequence

0- AUUUGAUUGUUGCUCAGAAAGCCG -24

Get sequence

Star sequence

Pma-Mir-315_3p* (predicted)

mirBase accession

None

Sequence

39- CUUUCGGGCAUCAAUCAAAACG -61

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