Mir-315

MirGeneDB ID

Pdu-Mir-315

Family name

MIR-315 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-315 Aga-Mir-315 Agr-Mir-315 Ava-Mir-315-P7 Ava-Mir-315-P8 Bge-Mir-315 Bko-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dgr-Mir-315-P1 Dgr-Mir-315-P2 Dlo-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Eba-Mir-315 Efe-Mir-315 Esc-Mir-315 Gpa-Mir-315 Gsp-Mir-315 Hru-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lhy-Mir-315 Llo-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Mgi-Mir-315-v1 Mom-Mir-315 Nag-Mir-315 Npo-Mir-315 Obi-Mir-315 Ofu-Mir-315 Ovu-Mir-315 Pau-Mir-315 Pca-Mir-315 Pcr-Mir-315 Pfl-Mir-315 Pma-Mir-315 Pve-Mir-315 Rph-Mir-315 Sko-Mir-315 Sme-Mir-315 Sne-Mir-315 Snu-Mir-315 Tca-Mir-315 Tur-Mir-315 War-Mir-315

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000011.1: 16298119-16298178 [+] Ensembl

Seed

UUUGAUU

Precursor
(pre-Mir +30nt flank)

AGCAGGAACUCCAAGAAACGUUCGUUCAGAUUUUGAUUGUUGCUCAGAAAGCCGUUGUGACUGACUGGCUAUCGGGUAGUAAUCAAAAAAUGAUGAGGGCGUUGUUUCGUCUCAAACUUC

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Structure

        10         20         30        40        50          
AGCAGGAACUCCAAGAA-      GU-|  GA               A  A    GUUGUG 
                  ACGUUC   UCA  UUUUGAUUGUUGCUC GA AGCC      \
                  UGCGGG   AGU  AAAACUAAUGAUGGG CU UCGG      A
CUUCAAACUCUGCUUUGU      AGU^  AA               -  A    UCAGUC 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-315_5p

mirBase accession

None

Sequence

0- UUUUGAUUGUUGCUCAGAAAGCC -23

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Star sequence

Pdu-Mir-315_3p*

mirBase accession

None

Sequence

38- CUAUCGGGUAGUAAUCAAAAAA -60

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