MirGeneDB ID | Npo-Mir-315 |
---|---|
Family name | MIR-315 (all species) |
Seed | UUUGAUU |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | |
Orthologues | Aae-Mir-315 Bge-Mir-315 Bpl-Mir-315 Cbr-Mir-315 Cel-Mir-315 Cgi-Mir-315-v1 Cgi-Mir-315-v2 Csc-Mir-315 Cte-Mir-315 Dan-Mir-315 Dma-Mir-315 Dme-Mir-315 Dmo-Mir-315 Dpu-Mir-315 Dsi-Mir-315 Dya-Mir-315 Efe-Mir-315 Esc-Mir-315 Isc-Mir-315 Lan-Mir-315 Lgi-Mir-315 Lpo-Mir-315-P3 Lpo-Mir-315-P4 Lpo-Mir-315-P5 Lpo-Mir-315-P6-v1 Lpo-Mir-315-P6-v2 Obi-Mir-315 Ovu-Mir-315 Pfl-Mir-315 Pma-Mir-315 Sko-Mir-315 Sme-Mir-315 Tca-Mir-315 |
Node of Origin (locus) | Bilateria |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010002187.1: 127806-127865 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GGGUAAAAAAAAAAAAAAUGUCUCUUCAUCUUUUGAUUGUAGCUCAGAAAGCCGGAACCAUGAACAGGCUAUCGAGUCGCAAUCAAAGACUGGUGGAGGCAGUUGAGCGGCGCCCGACAAGet precursor sequence |
Structure | 10 20 30 40 50 GGGUAAAAAAAAAAAAAA- -| UC UA A A CGGAACC UGUCUCU UCA UUUUGAUUG GCUC GA AGC \ ACGGAGG GGU GAAACUAAC UGAG CU UCG A AACAGCCCGCGGCGAGUUG U^ CA GC - A GACAAGU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Npo-Mir-315_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUUGAUUGUAGCUCAGAAAGC -22
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|
Co-mature sequence | Npo-Mir-315_3p (predicted) |
mirBase accession | None |
Sequence |
39- UAUCGAGUCGCAAUCAAAGAC -60
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|