| MirGeneDB ID | Dpu-Mir-315 |
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| Family name |
MIR-315 (all species) |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
dpu-mir-315
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-315
Aga-Mir-315
Agr-Mir-315
Ava-Mir-315-P7
Ava-Mir-315-P8
Bge-Mir-315
Bko-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dgr-Mir-315-P1
Dgr-Mir-315-P2
Dlo-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dsi-Mir-315
Dya-Mir-315
Eba-Mir-315
Efe-Mir-315
Esc-Mir-315
Gpa-Mir-315
Gsp-Mir-315
Hru-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lhy-Mir-315
Llo-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Mgi-Mir-315-v1
Mom-Mir-315
Nag-Mir-315
Npo-Mir-315
Obi-Mir-315
Ofu-Mir-315
Ovu-Mir-315
Pau-Mir-315
Pca-Mir-315
Pcr-Mir-315
Pdu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Pve-Mir-315
Rph-Mir-315
Sko-Mir-315
Sme-Mir-315
Sne-Mir-315
Snu-Mir-315
Tca-Mir-315
Tur-Mir-315
War-Mir-315
|
|---|
| Node of Origin (locus) |
Nephrozoa
|
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| Node of Origin (family) |
Nephrozoa
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_58: 431908-431996 [+]
Ensembl
|
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| Seed |
UUUGAUU |
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Precursor
(pre-Mir +30nt flank) |
UCUGCUGCAUUAUAUAAUAGCUCCCAAUGUUUUUGAUUGUUGCUCAGAAAGCCGUGCCAUUUCACAUUUUUGGCUGACGUCAAAAAAUCACAACUGGCUUUCGAGAAAUAAUCAGAAUCACAAAAGAGCCUCGAAUCAACGUGUCUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UCUGCUGCAUUAUAUAAUA- CCAA-| U G A GUGCCAUUUCACAUUUUUGG
GCUC UG UUUUGAUUGUU CUC GAAAGCC C
CGAG AC AAGACUAAUAA GAG CUUUCGG U
UAAUCUGUGCAACUAAGCUC AAAAC^ U A - UCAACACUAAAAAACUGCAG
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Dpu-Mir-315_5p |
| mirBase accession | MIMAT0012660 |
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| Sequence |
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
|
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| Star sequence |
Dpu-Mir-315_3p* |
| mirBase accession | None |
|---|
| Sequence |
67- CUUUCGAGAAAUAAUCAGAAUC -89
Get sequence
|
|---|
