MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-315

Family name MIR-315 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-315  Aga-Mir-315  Agr-Mir-315  Bge-Mir-315  Bko-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dlo-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Eba-Mir-315  Efe-Mir-315  Esc-Mir-315  Gpa-Mir-315  Gsp-Mir-315  Hru-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lhy-Mir-315  Llo-Mir-315  Mom-Mir-315  Nag-Mir-315  Npo-Mir-315  Obi-Mir-315  Ofu-Mir-315  Ovu-Mir-315  Pau-Mir-315  Pca-Mir-315  Pcr-Mir-315  Pdu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Pve-Mir-315  Rph-Mir-315  Sko-Mir-315  Sme-Mir-315  Sne-Mir-315  Snu-Mir-315  Tca-Mir-315  Tur-Mir-315  War-Mir-315 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold626: 79859-79920 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-315-v1)		 Mir-315-v1 scaffold626: 79859-79920 [-] Ensembl
Mir-315-v2 scaffold626: 79860-79919 [-] Ensembl
Variant

Mgi-Mir-315-v1
Seed UUUGAUU
Precursor
(pre-Mir +30nt flank)		 
AACGAGAAUAGUAAUAUAUGUCUCCUCACCUUUUGAUUGUUGCUCAGAAAGCCAUCUCUAAAAAGCGUGGCUAUCGAGCAACAAUCAAAGAUUGAAGGAGACUUGUUAACAGCAAAAUCAUC
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Structure
        10         20         30        40        50        60 
AACGAGAAUAGUAAUAUAU-      -|  CC               A  A    AUCUCUA 
                    GUCUCC UCA  UUUUGAUUGUUGCUC GA AGCC       \
                    CAGAGG AGU  GAAACUAACAACGAG CU UCGG       A
CUACUAAAACGACAAUUGUU      A^  UA               -  A    UGCGAAA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-315-v1_5p
mirBase accessionNone
Sequence 
0- UUUUGAUUGUUGCUCAGAAAGCC -23
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Star sequence

Mgi-Mir-315-v1_3p*
mirBase accessionNone
Sequence 
40- CUAUCGAGCAACAAUCAAAGAU -62
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Variant

Mgi-Mir-315-v2
Seed UUGAUUG
Precursor
(pre-Mir +30nt flank)		 
ACGAGAAUAGUAAUAUAUGUCUCCUCACCUUUUGAUUGUUGCUCAGAAAGCCAUCUCUAAAAAGCGUGGCUAUCGAGCAACAAUCAAAGAUUGAAGGAGACUUGUUAACAGCAAAAUCAU
Get precursor sequence
Structure
        10         20         30        40        50          
ACGAGAAUAGUAAUAUAU-      -|  CC               A  A     UCUCUA 
                   GUCUCC UCA  UUUUGAUUGUUGCUC GA AGCCA      \
                   CAGAGG AGU  GAAACUAACAACGAG CU UCGGU      A
UACUAAAACGACAAUUGUU      A^  UA               -  A     GCGAAA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-315-v2_5p
mirBase accessionNone
Sequence 
0- UUUGAUUGUUGCUCAGAAAGCCA -23
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Star sequence

Mgi-Mir-315-v2_3p*
mirBase accessionNone
Sequence 
38- GCUAUCGAGCAACAAUCAAAGA -60
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