Mir-278

MirGeneDB ID

Isc-Mir-278

Family name

MIR-278 (all species)

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609846.1: 201524982-201525048 [+] Ensembl

Seed

CGGAUGA

Precursor
(pre-Mir +30nt flank)

UAGGCUUCUGCAUUAUAGGCUCUGAUGUGUCCGGAUGAAUUUCUCGCCUGGCCGUUUCCGGUCCCCCGGAACAGGUCGGUGGGAUUUUCGUCCGUUUACGUCAGGCCUACAACAACCGUUAGCAGAC

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Structure

        10           20        30        40        50        60   
UAGGCUUCUGCAUUAUA---|  U        UC        UU       U    GUUUCCGGU 
                    GGC CUGAUGUG  CGGAUGAA  UCUCGCC GGCC         C
                    CCG GACUGCAU  GCCUGCUU  AGGGUGG CUGG         C
CAGACGAUUGCCAACAACAU^  -        UU        UU       -    ACAAGGCCC 
     120       110        100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Mature sequence

Isc-Mir-278_5p

mirBase accession

None

Sequence

0- CCGGAUGAAUUUCUCGCCUGGCC -23

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Star sequence

Isc-Mir-278_3p*

mirBase accession

MIMAT0016930

Sequence

45- UCGGUGGGAUUUUCGUCCGUUU -67

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