MirGeneDB 3.0
MirGeneDB ID

Bge-Mir-278

Family name MIR-278 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)		 KZ615041.1: 143304-143363 [+] Ensembl
Seed CGGUGGG
Precursor
(pre-Mir +30nt flank)		 
CAUAUGUCUCAUCACUAUUUGGUGGCACAUACGGAUGAUCGUCUCCGCCAACCGUGAAUAUAAUAAGGUCGGUGGGACUUUCGUCCGUUUGGGACACCUUGGAUACAUCUUGAGAAAUAC
Get precursor sequence
Structure
        10        20          30        40        50          
CAUAUGUCUCAUCACUAUUU--|   GCA  U        UC   U     A   GUGAAU 
                      GGUG   CA ACGGAUGA  GUC CCGCC ACC      \
                      CCAC   GU UGCCUGCU  CAG GGUGG UGG      A
CAUAAAGAGUUCUACAUAGGUU^   AGG  U        UU   -     C   AAUAAU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Star sequence

Bge-Mir-278_5p*
mirBase accessionNone
Sequence 
0- ACGGAUGAUCGUCUCCGCCAACC -23
Get sequence
Mature sequence

Bge-Mir-278_3p
mirBase accessionNone
Sequence 
38- UCGGUGGGACUUUCGUCCGUUU -60
Get sequence