Mir-278

MirGeneDB ID

Dma-Mir-278

Family name

MIR-278 (all species)

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046181.1: 8681550-8681703 [+] Ensembl

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

GCGUCCAGUACUUUUAAAGUGUGGUCACCUCCGGACAAGAGUCUUUCACCGGCCGUGCCCAUUUUCGAACGAUUUUCCAGUUUCUCGGCGGCGGAGGAUCUUACUUCUUUUUUUUUAUUGAGAUUCCGUUUUCGAGAGACGGGAAUGUCUAAACAAAACAGGUCGGUGGGACUUUCGUCCGUGUGUGAUGCACUUGACAACACGAUGGCGCCAA

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Structure

        10           20        30        40        50        60        70        80        90       100       
GCGUCCAGUACUUUUAA---|     G    CUC     A       UU        GUGCCCAUUUUCGAACGAUUUUCCAGUUUCUCGGCGGCGGAGGAUCUUACUU 
                    AGUGUG UCAC   CGGAC AGAGUCU  CACCGGCC                                                    C
                    UCACGU AGUG   GCCUG UUUCAGG  GUGGCUGG                                                    U
AACCGCGGUAGCACAACAGU^     -    UGU     C       --        ACAAAACAAAUCUGUAAGGGCAGAGAGCUUUUGCCUUAGAGUUAUUUUUUUU 
  210       200       190        180       170         160       150       140       130       120       110

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Star sequence

Dma-Mir-278_5p*

mirBase accession

None

Sequence

0- CCGGACAAGAGUCUUUCACCGGCC -24

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Mature sequence

Dma-Mir-278_3p

mirBase accession

None

Sequence

132- UCGGUGGGACUUUCGUCCGUGU -154

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