MirGeneDB 3.0
MirGeneDB ID

Aga-Mir-278

Family name MIR-278 (all species)
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-278
Paralogues
Orthologues Aae-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)		 NC_064602.1: 91486693-91486755 [-] Ensembl
Seed CGGUGGG
Precursor
(pre-Mir +30nt flank)		 
UACACACUACGCUUAUACGGUACGGUACGGACGGACGAUAGUCUUCAACGACCGUUCCGUUUGACACGAGGUCGGUGGGACUUUCGUCCGUUUGUAAGGCCAGCUGCAUCGAGAGUACUUCCA
Get precursor sequence
Structure
        10            20        30        40        50        60 
UACACACUACGCUUAUAC----|  ACGG             U     U  A     GUUCCGU 
                      GGU    UACGGACGGACGA AGUCU CA CGACC       U
                      CCG    AUGUUUGCCUGCU UCAGG GU GCUGG       U
ACCUUCAUGAGAGCUACGUCGA^  GA--             U     -  G     AGCACAG 
 120       110       100          90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-278_5p*
mirBase accessionNone
Sequence 
0- ACGGACGAUAGUCUUCAACGACC -23
Get sequence
Mature sequence

Aga-Mir-278_3p
mirBase accessionMIMAT0001511
Sequence 
41- UCGGUGGGACUUUCGUCCGUUU -63
Get sequence