MirGeneDB ID | Xbo-Mir-278 |
Family name |
MIR-278 (all species) |
Seed |
CGGUGGG |
Species |
Xenoturbella (Xenoturbella bocki) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-278
Bfl-Mir-278
Bge-Mir-278
Bla-Mir-278
Cgi-Mir-278
Csc-Mir-278
Cte-Mir-278
Dan-Mir-278
Dma-Mir-278
Dme-Mir-278
Dmo-Mir-278
Dpu-Mir-278
Dsi-Mir-278
Dya-Mir-278
Efe-Mir-278-P1-v1
Efe-Mir-278-P1-v2
Efe-Mir-278-P2
Esc-Mir-278
Hme-Mir-278
Isc-Mir-278
Lan-Mir-278
Lgi-Mir-278
Lpo-Mir-278-P3
Lpo-Mir-278-P4
Lpo-Mir-278-P5
Npo-Mir-278
Obi-Mir-278
Ovu-Mir-278
Pfl-Mir-278
Pmi-Mir-278
Sko-Mir-278
Sme-Mir-278
Spu-Mir-278
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Xbocki_plus) |
3C-assembly_contig_1803: 3133-3191 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCAGUCGGUUCGUAACUGUCCGCCCUGGACGGAUGAAUGUUUAACCUAUCGUUAUCUGUGAGCGGUCGGUGGGACUUUCGUUCGUGCAGGCGUACUAGUGCAAUCAACGAGGGUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCAGUCGGUUCGUAA-- -| C C G U UA U GUUAUC
CU GU CGCC UG ACGGAUGAA GUU ACC AUC \
GA CA GCGG AC UGCUUGCUU CAG UGG UGG U
UACUGGGAGCAACUAACGU U^ U - G U GG C CGAGUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xbo-Mir-278_5p* |
mirBase accession | None |
Sequence |
0- ACGGAUGAAUGUUUAACCUAUC -22
Get sequence
|
Mature sequence |
Xbo-Mir-278_3p |
mirBase accession | None |
Sequence |
37- UCGGUGGGACUUUCGUUCGUGC -59
Get sequence
|