Mir-278

MirGeneDB ID

Tur-Mir-278

Family name

MIR-278 (all species)

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587301.1: 5514204-5514268 [+] Ensembl

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

GGUCUUCCUUGGGAUUCGGGUAAAGUGCAAACGGAUAAAUAUUCCACCGAUACUCUUGAUUAUUUACCUUGAAUCGGUGGGAUUUUCGUCCGUCUGCAAGUUGCUCUGUUUAUCUAAUCAUCACC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GGUCUUCCUUGGGAUUC--|     AG    A     UA  U           ACUCUUGAUU 
                   GGGUAA  UGCA ACGGA  AA AUUCCACCGAU          \
                   CUCGUU  ACGU UGCCU  UU UAGGGUGGCUA          A
CCACUACUAAUCUAUUUGU^     GA    C     GC  U           AGUUCCAUUU 
   120       110       100        90        80        70