Mir-278-P6

MirGeneDB ID

Llo-Mir-278-P6

Family name

MIR-278 (all species)

Species

Bootlace worm (Lineus longissimus)

MiRBase ID

Paralogues

Llo-Mir-278-P7

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Lineidae

Node of Origin (family)

Bilateria

Genome context
(GCA_910592395.2_tnLinLong1)

OU342993.1: 21374766-21374826 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-278-P6)

Mir-278-P7 OU342993.1: 21374352-21374408 [-] Ensembl
Mir-278-P6 OU342993.1: 21374766-21374826 [-] Ensembl

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

GCGAAAAUCAAAAUCAACCAUUGGUCGCAGCCGGUCGAAAGCCUCCGCCAAUCGUCAAGUUAUAAUUGAUCGGUGGGACUUUCGUUCGCUUGUGAUUAGUGGUAAAACACCAGGUCAUGGA

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Structure

        10          20        30        40        50        60
GCGAAAAUCAAAAUCAA--|            C  GU      C U     A   GUCAAG 
                   CCAUUGGUCGCAG CG  CGAAAG C CCGCC AUC      U
                   GGUGAUUAGUGUU GC  GCUUUC G GGUGG UAG      U
AGGUACUGGACCACAAAAU^            C  UU      A -     C   UUAAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

No	No	No	No	No	No

Star sequence

Llo-Mir-278-P6_5p* (predicted)

mirBase accession

None

Sequence

0- CCGGUCGAAAGCCUCCGCCAAUC -23

Get sequence

Mature sequence

Llo-Mir-278-P6_3p

mirBase accession

None

Sequence

39- UCGGUGGGACUUUCGUUCGCUU -61

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