MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-278

Family name MIR-278 (all species)
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-278
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006947158: 2473-2533 [+] UCSC Ensembl
Seed UCGGUGG
Precursor
(pre-Mir +30nt flank)		 
UGGGGAAUGAUUAGAGAUAAAGGGAGUUGGACAAGGGUCCUUCAACCGCUAAGUACCCAACAUUUGGUACUCGGUGGGAGUAUUUUUGUACAACUCAAUCUCUCAACAACUUUGGCUCUUG
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Structure
        10        20          30        40        50        60 
UGGGGAAUGAUUAGAGAUAAAGG--|     G        C    A    CUA    CCCAA 
                         GAGUUG ACAAGGGU CUUC ACCG   AGUA     C
                         CUCAAC UGUUUUUA GAGG UGGC   UCAU     A
GUUCUCGGUUUCAACAACUCUCUAA^     A        U    G    ---    GGUUU 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gsa-Mir-278_5p*
mirBase accessionMIMAT0035294
Sequence 
0- ACAAGGGUCCUUCAACCGCUAAGUA -25
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Mature sequence

Gsa-Mir-278_3p
mirBase accessionMIMAT0035295
Sequence 
39- CUCGGUGGGAGUAUUUUUGUAC -61
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